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1

IntOGen: integration and data mining of multidimensional oncogenomic data

Gundem, Gunes, Perez-Llamas, Christian, Jene-Sanz, Alba, Kedzierska, Anna, Islam, Abul, Deu-Pons, Jordi, Furney, Simon J, Lopez-Bigas, Nuria

Journal:

Year:

2010

Language:

english

File:

PDF, 247 KB

english, 2010

2

A partially supervised classification approach to dominant and recessive human disease gene prediction

Borja Calvo, Núria López-Bigas, Simon J. Furney, Pedro Larrañaga, Jose A. Lozano

Journal:

Computer Methods and Programs in Biomedicine

Year:

2007

Language:

english

File:

PDF, 932 KB

english, 2007

3

Genomic characterisation of acral melanoma cell lines

Simon J. Furney, Samra Turajlic, Kerry Fenwick, Maryou B. Lambros, Alan MacKay, Gerda Ricken, Costas Mitsopoulos, Iwanka Kozarewa, Jarle Hakas, Marketa Zvelebil, Christopher J. Lord, Alan Ashworth, Jo

Journal:

Pigment Cell & Melanoma Research

Year:

2012

Language:

english

File:

PDF, 7.01 MB

english, 2012

4

Differences in the evolutionary history of disease genes affected by dominant or recessive mutations

Simon J Furney, M Mar Albà, Núria López-Bigas

Journal:

Year:

2006

Language:

english

File:

PDF, 320 KB

english, 2006

5

Structural and functional properties of genes involved in human cancer

Simon J Furney, Desmond G Higgins, Christos A Ouzounis, Núria López-Bigas

Journal:

Year:

2006

Language:

english

File:

PDF, 866 KB

english, 2006

6

Genome sequencing of mucosal melanomas reveals that they are driven by distinct mechanisms from cutaneous melanoma

Furney, Simon J, Turajlic, Samra, Stamp, Gordon, Nohadani, Mahrokh, Carlisle, Anna, Thomas, J Meirion, Hayes, Andrew, Strauss, Dirk, Gore, Martin, van den Oord, Joost, Larkin, James, Marais, Richard

Journal:

The Journal of Pathology

Year:

2013

Language:

english

File:

PDF, 543 KB

english, 2013

7

Expression of an Aβ transcription signature gene set in mouse and human brain

Killick, Richard, Ribe, Elena M., Malik, Bilal, Al-Shawi, Raya, Furney, Simon, Hooper, Claudie, Lin, Kuang, To, Alvina W.M., Lourdusamy, Anbarasu, Causevic, Mirsada, Dobson, Richard, Anderton, Brian H

Journal:

Alzheimer's & Dementia

Year:

2010

Language:

english

File:

PDF, 63 KB

english, 2010

8

EARLY DETECTION OF POLIOMYELITIS

Killick, Richard, Ribe, Elena M., Malik, Bilal, Al-Shawi, Raya, Furney, Simon, Hooper, Claudie, Lin, Kuang, To, Alvina W.M., Lourdusamy, Anbarasu, Causevic, Mirsada, Dobson, Richard, Anderton, Brian H

Journal:

Year:

1947

Language:

english

File:

PDF, 196 KB

english, 1947

9

An Aβ transcription signature

Ribe, Elena M., Killick, Richard, Al-Shawi, Raya, Malik, Bilal, Hooper, Claudie, Fernandes, Cathy, To, Alvina W.M., Lin, Kuang, Furney, Simon, Anderton, Brian, Simons, J. Paul, Lovestone, Simon

Journal:

Alzheimer's & Dementia

Year:

2010

Language:

english

File:

PDF, 44 KB

english, 2010

10

A blood gene expression biomarker of early Alzheimer's disease

Hodges, Angela, Lunnon, Katie, Furney, Simon, Proitsi, Petroula, Sattlecker, Martina, Dobson, Richard, Lourdusamy, Anbarasu, Simmons, Andrew, Coppola, Giovanni, Lupton, Michelle, Soininen, Hilkka

Journal:

Alzheimer's & Dementia

Year:

2011

Language:

english

File:

PDF, 75 KB

english, 2011

11

Plasma inflammatory markers correlate with severity in Alzheimer's disease

Leung, Rufina, Simmons, Andy, Guntert, Andreas, Kronenberg, Deborah, Furney, Simon J., Pritchard, Megan, Tsolaki, Magda, Mecocci, Patrizia, Kloszewska, Iwona, Vellas, Bruno, Soininen, Hikka, Spenger,

Journal:

Alzheimer's & Dementia

Year:

2010

Language:

english

File:

PDF, 50 KB

english, 2010

12

Alzheimer's disease susceptibility variants in the MS4A6A gene are associated with altered levels of MS4A6A expression in blood

Proitsi, Petroula, Lee, Sang Hyuck, Lunnon, Katie, Keohane, Aoife, Powell, John, Troakes, Claire, Al-Sarraj, Safa, Furney, Simon, Soininen, Hilkka, Kłoszewska, Iwona, Mecocci, Patrizia, Tsolaki, Magda

Journal:

Neurobiology of Aging

Year:

2014

Language:

english

File:

PDF, 1.04 MB

english, 2014

13

Ultraviolet radiation accelerates BRAF-driven melanomagenesis by targeting TP53

Viros, Amaya, Sanchez-Laorden, Berta, Pedersen, Malin, Furney, Simon J., Rae, Joel, Hogan, Kate, Ejiama, Sarah, Girotti, Maria Romina, Cook, Martin, Dhomen, Nathalie, Marais, Richard

Journal:

Year:

2014

Language:

english

File:

PDF, 4.78 MB

english, 2014

14

The mutational burden of acral melanoma revealed by whole-genome sequencing and comparative analysis

Furney, Simon J., Turajlic, Samra, Stamp, Gordon, Thomas, J. Meirion, Hayes, Andrew, Strauss, Dirk, Gavrielides, Mike, Xing, Wei, Gore, Martin, Larkin, James, Marais, Richard

Journal:

Pigment Cell & Melanoma Research

Year:

2014

Language:

english

File:

PDF, 7.41 MB

english, 2014

15

Onco-STS: a web-based laboratory information management system for sample and analysis tracking in oncogenomic experiments

Gavrielides, Mike, Furney, Simon J, Yates, Tim, Miller, Crispin J, Marais, Richard

Journal:

Source Code for Biology and Medicine

Year:

2014

Language:

english

File:

PDF, 703 KB

english, 2014

16

Identification of coding and non-coding mutational hotspots in cancer genomes

Piraino, Scott W., Furney, Simon J.

Journal:

Year:

2017

Language:

english

File:

PDF, 2.05 MB

english, 2017

17

Corrigendum: Ultraviolet radiation accelerates BRAF-driven melanomagenesis by targeting TP53

Viros, Amaya, Sanchez-Laorden, Berta, Pedersen, Malin, Furney, Simon J., Rae, Joel, Hogan, Kate, Ejiama, Sarah, Girotti, Maria Romina, Cook, Martin, Dhomen, Nathalie, Marais, Richard

Journal:

Year:

2015

Language:

english

File:

PDF, 157 KB

english, 2015

18

Truncation- and motif-based pan-cancer analysis reveals tumor-suppressing kinases

Hudson, Andrew M., Stephenson, Natalie L., Li, Cynthia, Trotter, Eleanor, Fletcher, Adam J., Katona, Gitta, Bieniasz-Krzywiec, Patrycja, Howell, Matthew, Wirth, Chris, Furney, Simon, Miller, Crispin J

Journal:

Science Signaling

Year:

2018

Language:

english

File:

PDF, 1.66 MB

english, 2018

19

Germline single nucleotide polymorphisms in ERBB3 and BARD1 genes result in a worse relapse free survival response for HER2-positive breast cancer patients treated with adjuvant based docetaxel, carboplatin and trastuzumab (TCH)

Coté, Damien, Eustace, Alex, Toomey, Sinead, Cremona, Mattia, Milewska, Malgorzata, Furney, Simon, Carr, Aoife, Fay, Joanna, Kay, Elaine, Kennedy, Susan, Crown, John, Hennessy, Bryan, Madden, Stephen,

Journal:

Year:

2018

Language:

english

File:

PDF, 7.96 MB

english, 2018

20

Combinatorial Markers of Mild Cognitive Impairment Conversion to Alzheimer's Disease - Cytokines and MRI Measures Together Predict Disease Progression

Furney, Simon J., Kronenberg, Deborah, Simmons, Andrew, Güntert, Andreas, Dobson, Richard J., Proitsi, Petroula, Wahlund, Lars Olof, Kloszewska, Iwona, Mecocci, Patrizia, Soininen, Hilkka, Tsolaki, Ma

Journal:

Journal of Alzheimer's Disease

Year:

2011

Language:

english

File:

PDF, 292 KB

english, 2011

21

KH-Type Splicing Regulatory Protein Controls Colorectal Cancer Cell Growth and Modulates the Tumor Microenvironment

Caiazza, Francesco, Oficjalska, Katarzyna, Tosetto, Miriam, Phelan, James J., Noonan, Sinéad, Martin, Petra, Killick, Kate, Breen, Laura, O'Neill, Fiona, Nolan, Blathnaid, Furney, Simon, Power, Robert

Journal:

The American Journal of Pathology

Year:

2019

Language:

english

File:

PDF, 1.64 MB

english, 2019

22

Mucinous adenocarcinoma of the colon and rectum: A genomic analysis

Reynolds, Ian S., O'Connell, Emer, Fichtner, Michael, McNamara, Deborah A., Kay, Elaine W., Prehn, Jochen H. M., Furney, Simon J., Burke, John P.

Journal:

Journal of Surgical Oncology

Year:

2019

Language:

english

File:

PDF, 5.93 MB

english, 2019

23

Mucinous adenocarcinoma is a pharmacogenomically distinct subtype of colorectal cancer

Reynolds, Ian S., O’Connell, Emer, Fichtner, Michael, McNamara, Deborah A., Kay, Elaine W., Prehn, Jochen H. M., Furney, Simon J., Burke, John P.

Journal:

The Pharmacogenomics Journal

Year:

2019

File:

PDF, 805 KB

2019

24

Genomic profiling of a dedifferentiated mucosal melanoma following exposure to immunotherapy

Prior, Lisa, Toomey, Sinead, Greally, Megan, Keane, Fergus, Lim, Marvin, Harrold, Emily, O’Keane, Conor, Bulger, Kyran, Hennessy, Bryan T., Furney, Simon J., McCaffrey, John

Journal:

Melanoma Research

Year:

2019

File:

PDF, 659 KB

2019

25

AB064. Defining the genomic landscape of mucinous rectal cancer

Reynolds, Ian Sean, OâConnell, Emer, Fichtner, Michael, McNamara, Deborah, Kay, Elaine, Prehn, Jochen, Furney, Simon, Burke, John

Journal:

Mesentery and Peritoneum

Year:

2020

File:

PDF, 85 KB

2020

26

Personalised mapping of tumour development in synchronous colorectal cancer patients

Thomas, Valentina, Cotter, Maura B., Tosetto, Miriam, Khaw, Yi Ling, Geraghty, Robert, Winter, Desmond C., Ryan, Elizabeth J., Sheahan, Kieran, Furney, Simon J.

Journal:

npj Genomic Medicine

Year:

2020

File:

PDF, 1.20 MB

2020

27

Whole-exome sequencing of long-term, never relapse exceptional responders of trastuzumab-treated HER2+ metastatic breast cancer

Walsh, Naomi, Andrieu, Charlotte, OâDonovan, Peter, Quinn, Cecily, Maguire, Alanna, Furney, Simon J., Gullo, Giuseppe, Crown, John

Journal:

British Journal of Cancer

Year:

2020

File:

PDF, 459 KB

2020

28

Mucinous Adenocarcinoma of the Rectum: A Whole Genome Sequencing Study

Reynolds, Ian S., Thomas, Valentina, OâConnell, Emer, Fichtner, Michael, McNamara, Deborah A., Kay, Elaine W., Prehn, Jochen H. M., Burke, John P., Furney, Simon J.

Journal:

Frontiers in Oncology

Year:

2020

File:

PDF, 4.55 MB

2020